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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
43
DNA methylation
Date released
21
July, 2019
15
August, 2017
7
November, 2018
Available data
30
bed bedMethyl
30
bigBed bedMethyl
18
bam
17
bigWig
15
fastq
Organism
43
Homo sapiens
Biosample type
38
tissue
4
primary cell
1
cell line
Organ
epithelium
53
pancreas
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
43
AMP
Genome assembly (visualization)
17
GRCh38
13
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
43 results
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WGBS
RRBS
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 13 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
cell line
HepG2
1
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