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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
2
DNA methylation
Date released
8
March, 2020
2
July, 2019
1
May, 2021
Available data
6
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
ibed
Organism
11
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
2
cell line
2
tissue
1
stem cell
Organ
3
kidney
2
connective tissue
1
epithelium
1
heart
1
stomach
1
urinary bladder
Project
10
AMP
1
T1D
Genome assembly (visualization)
4
hg19
Lab
10
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
11 results
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pCHi-C
RRBS
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
lymphocyte of B lineage (iPSC)
1
primary cell
cardiac fibroblast
1
epithelial cell of proximal tubule
1
naive B cel
1
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
tissue
bladder (urinary bladder)
1
gastric (mucosa of stomach)
1
stem cell
mesenchymal stem cell
1
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