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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
247
Transcription
10
DNA methylation
Date released
76
February, 2023
55
May, 2021
47
May, 2020
26
September, 2018
22
July, 2019
16
September, 2020
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
August, 2017
1
February, 2021
Available data
152
bigWig
150
bam
150
tsv
121
fastq
10
bed bedMethyl
10
bigBed bedMethyl
2
bed bed3+
Organism
257
Homo sapiens
Biosample type
1048
tissue
257
primary cell
136
in vitro differentiated cells
113
cell line
Organ
99
epithelium
81
pancreas
11
connective tissue
9
kidney
6
liver
5
heart
3
vasculature
2
artery
2
blood vessel
2
musculature of body
1
adipose tissue
1
brain
1
eye
1
pericardium
Project
96
T1D
92
HPAP
69
AMP
Genome assembly (visualization)
162
hg19
150
GRCh38
Lab
98
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
67
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
257 results
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total RNA-seq
RRBS
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
1
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