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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
403
Transcription
2
DNA methylation
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
April, 2018
6
May, 2022
5
March, 2020
4
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
336
bam
332
tsv
330
bigWig
184
fastq
6
txt
2
bed bedMethyl
2
bigBed bedMethyl
Organism
405
Homo sapiens
Biosample type
291
tissue
81
primary cell
33
cell line
Organ
475
connective tissue
405
pancreas
398
adipose tissue
191
liver
137
epithelium
74
heart
64
kidney
62
bone element
62
vasculature
61
blood vessel
56
artery
20
eye
19
brain
14
embryo
11
musculature of body
7
limb
5
nerve
4
skeleton
2
pericardium
1
spinal cord
Project
343
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
332
hg19
330
GRCh38
Lab
339
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
BIOSAMPLE
ASSAY
405 results
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Clear Filters
total RNA-seq
RRBS
tissue
islet of Langerhans
284
1
body of pancreas
3
pancreas
2
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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