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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1682
ChIP-seq
1331
total RNA-seq
442
ATAC-seq
261
single cell RNA-seq
179
DNase-seq
84
snATAC-seq
67
WGBS
45
pCHi-C
26
Hi-C
18
RRBS
17
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA methylation
Date released
12
July, 2019
6
August, 2017
Available data
16
bed bedMethyl
16
bigBed bedMethyl
4
fastq
Organism
18
Homo sapiens
Biosample type
10
tissue
8
primary cell
Organ
5
epithelium
5
musculature of body
3
kidney
2
brain
2
liver
2
pancreas
1
eye
heart
1
pericardium
1
vasculature
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
18
AMP-T2D consortium
Audit category:
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inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
18 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
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