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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1741
ChIP-seq
1397
total RNA-seq
488
ATAC-seq
353
single cell RNA-seq
176
DNase-seq
83
snATAC-seq
74
WGBS
47
pCHi-C
23
Hi-C
16
small RNA-seq
14
RRBS
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
DNA methylation
Date released
12
July, 2019
2
August, 2017
Available data
14
bed bedMethyl
14
bigBed bedMethyl
2
fastq
Organism
14
Homo sapiens
Biosample type
7
primary cell
7
tissue
Organ
5
epithelium
musculature of body
3
kidney
2
brain
2
liver
2
pancreas
1
eye
1
heart
1
pericardium
1
vasculature
Project
14
AMP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
14 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 2 more…
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
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