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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
DNA methylation
Date released
9
July, 2019
3
February, 2023
1
August, 2017
Available data
10
bed bedMethyl
10
bigBed bedMethyl
1
fastq
Organism
13
Homo sapiens
Biosample type
tissue
10
primary cell
3
cell line
Organ
6
epithelium
3
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
10
AMP
3
T1D
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
13 results
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RRBS
CRISPR genome editing followed by DNA sequencing
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
EndoC_BH1
3
See all biosamples
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