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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
103
DNA accessibility
6
DNA methylation
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
6
July, 2019
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
34
bigWig
32
fastq
24
bam
22
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
tsv
Organism
109
Homo sapiens
Biosample type
78
primary cell
19
cell line
12
tissue
Organ
154
pancreas
109
epithelium
79
kidney
49
heart
47
vasculature
46
blood vessel
45
artery
29
eye
26
connective tissue
25
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
6
brain
6
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spleen
Project
60
AMP
49
HPAP
Genome assembly (visualization)
44
hg19
34
GRCh38
Lab
60
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
RRBS
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
+ See 6 more…
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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