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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
5
August, 2021
2
February, 2023
2
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
tar
Organism
12
Homo sapiens
Biosample type
7
cell line
4
tissue
1
primary cell
Organ
3
kidney
2
liver
2
pancreas
1
blood vessel
1
brain
1
epithelium
1
vasculature
1
vein
Project
10
AMP
2
T1D
Genome assembly (visualization)
5
hg19
Lab
5
AMP-T2D consortium
5
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
GRO-seq
BIOSAMPLE
ASSAY
12 results
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FAIRE-seq
STARR-seq
HiChIP
cell line
EndoC_BH1
2
HEK293T
2
HepG2
2
Synthesized DNA
1
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
primary cell
endothelial cell of umbilical vein
1
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