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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1319
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1
Transcription
Date released
3
August, 2021
1
March, 2023
Organism
3
Homo sapiens
Biosample type
4
cell line
Organ
2
kidney
liver
Project
3
AMP
1
community
Lab
3
Bing Ren, UCSD
1
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
pCHi-C
organ_slims!
liver
BIOSAMPLE
ASSAY
4 results
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STARR-seq
siRNA RNA-seq
cell line
HEK293T
2
EndoC-BH1
1
Synthesized DNA
1