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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
4
August, 2021
Available data
18
bam
18
bigWig
18
tsv
Organism
22
Homo sapiens
Biosample type
16
tissue
4
cell line
2
primary cell
Organ
5
liver
4
brain
3
adipose tissue
3
connective tissue
3
kidney
2
musculature of body
2
pancreas
1
heart
Project
22
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
18
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
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BIOSAMPLE
ASSAY
22 results
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small RNA-seq
STARR-seq
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
cell line
HEK293T
2
HepG2
2
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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