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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
18
Transcription
Date released
27
February, 2021
22
May, 2022
18
July, 2019
16
January, 2021
11
August, 2021
10
April, 2020
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
18
bam
18
bigWig
18
tsv
1
bed bed3+
1
txt
Organism
106
Homo sapiens
Biosample type
58
primary cell
44
tissue
5
cell line
Organ
13
pancreas
10
lung
9
kidney
8
blood
8
bodily fluid
5
liver
4
brain
3
adipose tissue
3
connective tissue
3
musculature of body
1
heart
Project
48
HPAP
31
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
48
Klaus Kaestner, Upenn
20
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
Bing Ren, UCSD
Audit category:
29
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
107 results
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snATAC-seq
small RNA-seq
STARR-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
+ See 13 more…
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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