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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
0
STARR-seq
Assay category
197
Transcription
76
DNA accessibility
Date released
83
February, 2023
51
May, 2021
45
May, 2020
27
February, 2021
21
May, 2022
16
January, 2021
16
September, 2020
10
April, 2020
4
March, 2020
Available data
119
fastq
98
bam
98
bigWig
98
tsv
21
zippedFastqFolder
Organism
272
Homo sapiens
Biosample type
244
primary cell
27
tissue
2
cell line
Organ
72
pancreas
55
epithelium
10
lung
8
blood
8
bodily fluid
Project
AMP
140
HPAP
123
T1D
10
LungMap
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
140
Klaus Kaestner, Upenn
119
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
Audit category:
27
audit script error
6
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
273 results
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total RNA-seq
snATAC-seq
primary cell
monocyte
53
Langerhans cell
48
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 25 more…
tissue
islet of Langerhans
7
6
lung
10
pancreas
4
cell line
EndoC_BH1
2
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