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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1864
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
86
RNA microarray
83
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
83
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
11
August, 2021
9
April, 2020
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
88
Homo sapiens
Biosample type
56
primary cell
27
tissue
5
cell line
Organ
11
pancreas
9
lung
8
blood
8
bodily fluid
8
kidney
2
liver
1
musculature of body
Project
48
HPAP
18
T1D
13
AMP
9
LungMap
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
Bing Ren, UCSD
2
AMP-T2D consortium
Audit category:
29
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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snATAC-seq
STARR-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
9
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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