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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
297
ATAC-seq
263
single cell RNA-seq
250
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
32
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
5
August, 2021
3
August, 2017
3
February, 2021
2
October, 2019
Available data
3
tsv
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Organism
13
Homo sapiens
Biosample type
5
cell line
4
primary cell
4
tissue
Organ
7
kidney
3
liver
2
epithelium
Project
13
AMP
Genome assembly (visualization)
GRCh38
186
hg19
Lab
8
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
13 results
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DNase-seq
STARR-seq
snDrop-seq
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
right lobe of liver
1
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