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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
5
August, 2021
3
February, 2021
Available data
21
tsv
18
bam
18
bigWig
Organism
26
Homo sapiens
Biosample type
19
tissue
5
cell line
2
primary cell
Organ
6
kidney
5
liver
4
brain
3
adipose tissue
3
connective tissue
2
musculature of body
2
pancreas
1
heart
Project
26
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
21
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
26 results
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small RNA-seq
STARR-seq
snDrop-seq
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 12 more…
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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