Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1779
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
snDrop-seq
Assay category
17
Transcription
Date released
17
July, 2019
3
August, 2021
Available data
17
bam
17
bigWig
17
tsv
Organism
20
Homo sapiens
Biosample type
15
tissue
3
cell line
2
primary cell
Organ
kidney
5
liver
4
brain
3
adipose tissue
3
connective tissue
2
musculature of body
2
pancreas
1
heart
Project
20
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
20 results
search-icon
table-tab-icon
Clear Filters
small RNA-seq
STARR-seq
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 8 more…
cell line
HepG2
2
Synthesized DNA
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
See all biosamples
Download