Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
snDrop-seq
Assay category
152
Transcription
1
DNA sequencing
Date released
47
September, 2023
40
September, 2020
33
May, 2022
14
August, 2021
12
February, 2021
9
April, 2020
3
May, 2023
Available data
52
zippedFastqFolder
34
fastq
8
txt
1
vcf
Organism
158
Homo sapiens
Biosample type
85
primary cell
67
tissue
6
cell line
Organ
60
kidney
9
lung
3
liver
Project
85
HPAP
47
KPMP
17
AMP
9
LungMap
Lab
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
STARR-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
tissue
kidney
58
lung
9
cell line
HepG2
2
1
HEK293T
2
Synthesized DNA
1
Download