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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1325
total RNA-seq
467
ATAC-seq
222
single cell RNA-seq
212
DNase-seq
87
RNA microarray
28
WGBS
21
RRBS
20
Hi-C
18
small RNA-seq
10
MeRIP-seq
8
pCHi-C
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
whole genome sequencing assay
Date released
March, 2020
5
August, 2021
4
October, 2019
2
February, 2021
1
August, 2018
1
May, 2020
Available data
2
bed bed3+
1
bam
1
bedpe bed3+
1
fastq
1
tsv
Organism
13
Homo sapiens
Biosample type
7
cell line
4
tissue
1
in vitro differentiated cells
1
primary cell
Organ
4
eye
4
liver
2
connective tissue
2
kidney
1
adipose tissue
Project
17
T1D
13
AMP
Genome assembly (visualization)
2
hg19
Lab
8
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
March, 2020
BIOSAMPLE
ASSAY
13 results
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pCHi-C
STARR-seq
cell line
HepG2
2
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
4
in vitro differentiated cells
white fat cell
1
primary cell
osteoblast
1
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