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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1548
ChIP-seq
1277
total RNA-seq
320
ATAC-seq
181
DNase-seq
120
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
WGBS
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
8
snATAC-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
5
August, 2021
2
July, 2019
1
August, 2017
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
Organism
9
Homo sapiens
Biosample type
5
cell line
4
tissue
primary cell
Organ
3
kidney
2
liver
2
pancreas
1
brain
Project
9
AMP
Genome assembly (visualization)
4
hg19
Lab
5
Bing Ren, UCSD
4
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
9 results
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STARR-seq
FAIRE-seq
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
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