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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1286
total RNA-seq
465
ATAC-seq
225
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
22
Hi-C
16
WGBS
10
MeRIP-seq
8
snATAC-seq
6
RRBS
5
GRO-seq
5
STARR-seq
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
July, 2019
9
August, 2017
7
November, 2018
5
August, 2021
Available data
11
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
Organism
21
Homo sapiens
Biosample type
15
tissue
6
cell line
Organ
6
adipose tissue
6
connective tissue
6
liver
4
pancreas
2
kidney
2
spleen
Project
47
HPAP
21
AMP
Genome assembly (visualization)
9
GRCh38
Lab
16
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
Capture-C
month_released!
July, 2019
BIOSAMPLE
ASSAY
21 results
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WGBS
STARR-seq
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
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cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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