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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1649
ChIP-seq
1264
total RNA-seq
424
ATAC-seq
182
DNase-seq
129
single cell RNA-seq
87
RNA microarray
37
pCHi-C
27
Hi-C
20
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
20
DNA methylation
Date released
9
August, 2017
7
November, 2018
5
August, 2021
4
July, 2019
Available data
12
bam
11
bed bedMethyl
11
bigBed bedMethyl
11
bigWig
11
fastq
Organism
25
Homo sapiens
Biosample type
19
tissue
6
cell line
Organ
heart
7
liver
6
adipose tissue
6
connective tissue
4
pancreas
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
25
AMP
Genome assembly (visualization)
11
GRCh38
Lab
20
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
25 results
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WGBS
STARR-seq
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 4 more…
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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