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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1723
ChIP-seq
1336
total RNA-seq
470
ATAC-seq
222
single cell RNA-seq
211
DNase-seq
87
RNA microarray
39
pCHi-C
30
Hi-C
26
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
26
DNA methylation
Date released
12
July, 2019
9
August, 2017
5
August, 2021
5
November, 2018
Available data
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
9
fastq
Organism
31
Homo sapiens
Biosample type
25
tissue
6
cell line
Organ
8
heart
7
liver
6
adipose tissue
6
connective tissue
4
pancreas
2
blood vessel
2
kidney
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
31
AMP
Genome assembly (visualization)
15
GRCh38
Lab
26
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
31 results
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WGBS
STARR-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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