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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1641
ChIP-seq
1275
total RNA-seq
425
ATAC-seq
216
single cell RNA-seq
201
DNase-seq
87
RNA microarray
39
pCHi-C
26
WGBS
25
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
26
DNA methylation
Date released
10
July, 2019
9
August, 2017
7
November, 2018
5
August, 2021
Available data
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
31
Homo sapiens
Biosample type
25
tissue
6
cell line
Organ
8
heart
7
liver
6
adipose tissue
6
connective tissue
4
pancreas
2
blood vessel
2
kidney
2
spleen
vasculature
1
limb
1
musculature of body
Project
47
HPAP
31
AMP
Genome assembly (visualization)
16
GRCh38
Lab
26
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
31 results
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WGBS
STARR-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 7 more…
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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