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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1649
ChIP-seq
1258
total RNA-seq
424
ATAC-seq
182
DNase-seq
135
single cell RNA-seq
87
RNA microarray
37
pCHi-C
27
Hi-C
20
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
39
DNA methylation
Date released
17
July, 2019
15
August, 2017
7
November, 2018
5
August, 2021
Available data
28
bed bedMethyl
28
bigBed bedMethyl
15
fastq
12
bam
11
bigWig
Organism
44
Homo sapiens
Biosample type
29
tissue
9
primary cell
6
cell line
Organ
heart
9
liver
7
connective tissue
6
adipose tissue
6
epithelium
6
kidney
6
musculature of body
6
pancreas
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
44
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
39
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
44 results
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WGBS
RRBS
STARR-seq
tissue
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 9 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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