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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1569
ChIP-seq
995
total RNA-seq
379
ATAC-seq
204
DNase-seq
148
single cell RNA-seq
87
RNA microarray
39
pCHi-C
24
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
7
snATAC-seq
5
GRO-seq
5
STARR-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
24
DNA methylation
7
DNA accessibility
Date released
12
July, 2019
11
August, 2021
9
August, 2017
3
November, 2018
1
May, 2022
Available data
14
bam
13
bed bedMethyl
13
bigBed bedMethyl
13
bigWig
7
fastq
1
bed bed3+
1
txt
Organism
36
Homo sapiens
Biosample type
30
tissue
6
cell line
Organ
8
heart
8
kidney
7
liver
6
adipose tissue
6
connective tissue
pancreas
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
48
HPAP
36
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
13
GRCh38
1
hg19
Lab
25
AMP-T2D consortium
6
Katalin Susztak, Upenn
5
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
36 results
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WGBS
snATAC-seq
STARR-seq
tissue
kidney
6
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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