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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1743
ChIP-seq
1336
total RNA-seq
471
ATAC-seq
222
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
21
DNA methylation
1
DNA sequencing
Date released
15
July, 2019
6
August, 2017
6
August, 2021
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
1
vcf
Organism
27
Homo sapiens
Biosample type
11
tissue
10
primary cell
6
cell line
Organ
6
epithelium
6
kidney
5
liver
5
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
27
AMP
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
6
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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RRBS
STARR-seq
whole genome sequencing assay
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
2
1
HEK293T
2
Synthesized DNA
1
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