Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
319
ATAC-seq
141
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
34
pCHi-C
22
Hi-C
21
RRBS
11
WGBS
8
snATAC-seq
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
2
Capture-C
1
DNAme array
0
STARR-seq
Assay category
22
3D chromatin structure
Date released
10
March, 2020
4
July, 2019
4
October, 2019
2
August, 2021
1
March, 2019
1
November, 2019
Available data
17
hic
15
bedpe bed3+
4
bed bed3+
bigWig
4
hdf5
1
bedpe
Organism
22
Homo sapiens
Biosample type
16
tissue
cell line
4
in vitro differentiated cells
2
primary cell
Organ
6
musculature of body
4
limb
4
pancreas
3
blood vessel
3
heart
3
vasculature
2
epithelium
2
vein
1
kidney
1
liver
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
biosample_type!
cell line
files.file_type!
bigWig
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
See all biosamples
Download