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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1700
ChIP-seq
1262
total RNA-seq
395
ATAC-seq
212
DNase-seq
116
single cell RNA-seq
86
RNA microarray
40
pCHi-C
28
WGBS
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
0
STARR-seq
Assay category
116
Transcription
Target of assay
3
control
Date released
August, 2021
48
July, 2018
43
April, 2018
6
February, 2021
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
107
tsv
100
bam
100
bigWig
94
fastq
8
csv
5
txt
Organism
116
Homo sapiens
Biosample type
102
primary cell
12
tissue
2
in vitro differentiated cells
Organ
74
pancreas
70
epithelium
9
kidney
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
116
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
113
AMP-T2D consortium
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
116 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
tissue
kidney
9
heart
1
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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