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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1630
ChIP-seq
1222
total RNA-seq
333
ATAC-seq
212
DNase-seq
119
single cell RNA-seq
86
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
0
STARR-seq
Assay category
119
Transcription
Target of assay
3
control
Date released
August, 2021
49
April, 2018
48
July, 2018
6
February, 2021
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
113
tsv
106
bam
106
bigWig
100
fastq
8
csv
5
txt
Organism
119
Homo sapiens
Biosample type
102
primary cell
15
tissue
2
in vitro differentiated cells
Organ
80
pancreas
70
epithelium
6
kidney
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
119
AMP
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
119
AMP-T2D consortium
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
119 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
tissue
islet of Langerhans
6
kidney
6
heart
1
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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