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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
60
total RNA-seq
52
ChIP-seq
17
single cell RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
52
DNA binding
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
23
April, 2019
21
October, 2019
5
May, 2019
3
June, 2019
2
August, 2021
Available data
52
bam
39
bed narrowPeak
39
bigWig
24
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
27
tissue
15
primary cell
12
cell line
Organ
554
liver
218
brain
214
pancreas
153
connective tissue
127
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
54
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
54
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
52
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
STARR-seq
tissue
kidney
27
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
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