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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
483
ChIP-seq
109
total RNA-seq
13
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
13
DNA accessibility
Date released
May, 2021
9
February, 2021
5
August, 2021
2
March, 2020
1
January, 2018
1
November, 2019
Available data
10
bam
10
bed narrowPeak
3
bigWig
1
bed bed3
1
tsv
Organism
18
Homo sapiens
Biosample type
260
tissue
187
primary cell
37
in vitro differentiated cells
18
cell line
Organ
8
artery
8
blood vessel
8
heart
8
vasculature
3
epithelium
3
liver
3
pancreas
2
kidney
1
blood
1
bodily fluid
Project
18
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
month_released!
May, 2021
BIOSAMPLE
ASSAY
18 results
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ATAC-seq
STARR-seq
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
HepG2
1
2
HEK293T
2
GM12878
1
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