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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
DNA accessibility
1
Transcription
Date released
16
May, 2021
9
February, 2021
5
August, 2021
2
March, 2020
1
January, 2018
1
March, 2023
1
November, 2019
Available data
10
bam
10
bed narrowPeak
3
bigWig
1
bed bed3
1
tsv
Organism
34
Homo sapiens
Biosample type
260
tissue
200
primary cell
42
in vitro differentiated cells
35
cell line
Organ
19
epithelium
19
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
3
liver
2
kidney
1
blood
1
bodily fluid
Project
34
AMP
1
community
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
29
AMP-T2D consortium
5
Bing Ren, UCSD
1
Anna Gloyn, Oxford
Audit category:
20
inconsistent ontology term
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
STARR-seq
siRNA RNA-seq
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
2
HEK293T
2
EndoC-BH1
1
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