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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
29
DNA accessibility
Date released
87
February, 2021
22
August, 2021
20
May, 2021
6
March, 2020
5
January, 2019
4
October, 2019
2
November, 2019
1
January, 2018
Available data
114
bam
114
tsv
107
bigWig
10
bed narrowPeak
5
fastq
1
bed bed3
Organism
147
Homo sapiens
Biosample type
1297
tissue
447
primary cell
178
in vitro differentiated cells
147
cell line
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
53
epithelium
52
pancreas
17
liver
8
embryo
6
kidney
1
blood
1
bodily fluid
Project
145
AMP
2
T1D
Genome assembly (visualization)
117
hg19
114
GRCh38
Lab
133
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
147 results
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total RNA-seq
ATAC-seq
STARR-seq
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
33
19
HepG2
14
1
2
H1-hESC
8
HEK293T
2
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