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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
108
Transcription
Date released
78
February, 2021
22
August, 2021
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
113
tsv
104
bam
104
bigWig
fastq
Organism
113
Homo sapiens
Biosample type
934
tissue
127
primary cell
121
in vitro differentiated cells
113
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
11
liver
8
embryo
6
kidney
Project
111
AMP
2
T1D
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
99
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
STARR-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
9
2
H1-hESC
8
HEK293T
2
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