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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
113
total RNA-seq
29
ATAC-seq
10
pCHi-C
6
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
487
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
81
control
65
RNA binding protein
40
histone
40
histone modification
30
chromatin remodeller
20
broad histone mark
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
August, 2021
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
3
December, 2017
1
March, 2020
1
May, 2021
Available data
468
bam
423
fastq
413
bigWig
394
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
Organism
492
Homo sapiens
Biosample type
907
tissue
489
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
380
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
12
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
490
AMP
2
T1D
Genome assembly (visualization)
410
hg19
349
GRCh38
Lab
469
AMP-T2D consortium
23
Bing Ren, UCSD
Audit category:
26
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
28
inconsistent control read length
8
inconsistent control run_type
assay_title!
MPRA
BIOSAMPLE
ASSAY
492 results
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ChIP-seq
STARR-seq
cell line
HepG2
378
2
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
iPSC derived cell line
2
Synthesized DNA
1
stem cell
hESC
3
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