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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
484
DNA binding
29
DNA accessibility
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
August, 2021
23
October, 2019
18
January, 2019
17
February, 2021
17
May, 2021
14
November, 2019
3
March, 2020
1
January, 2018
Available data
475
bam
420
fastq
414
bigWig
402
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
tsv
Organism
518
Homo sapiens
Biosample type
1127
tissue
518
cell line
479
primary cell
240
in vitro differentiated cells
3
stem cell
Organ
381
liver
61
blood
61
bodily fluid
47
pancreas
34
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
12
kidney
Project
516
AMP
2
T1D
Genome assembly (visualization)
420
hg19
356
GRCh38
Lab
495
AMP-T2D consortium
23
Bing Ren, UCSD
Audit category:
45
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
518 results
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ChIP-seq
ATAC-seq
STARR-seq
cell line
HepG2
378
1
2
GM12878
60
1
EndoC_BH1
15
19
smooth muscle cell of the coronary artery
6
8
Panc1
13
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
iPSC derived cell line
2
Synthesized DNA
1
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