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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
3D chromatin structure
Date released
6
August, 2021
1
December, 2018
1
November, 2019
1
October, 2019
1
October, 2022
Available data
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
1
txt
Organism
9
Homo sapiens
Biosample type
16
tissue
10
cell line
10
primary cell
4
in vitro differentiated cells
Organ
4
liver
2
kidney
2
pancreas
1
epithelium
Project
10
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
6
Bing Ren, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
10 results
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STARR-seq
Hi-C
MPRA
cell line
HepG2
2
2
HEK293T
2
EndoC_BH1
1
MIN6
1
Panc1
1
Synthesized DNA
1
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