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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
270
ATAC-seq
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
26
DNA accessibility
Date released
41
May, 2022
23
June, 2019
12
July, 2019
10
August, 2017
7
November, 2018
6
February, 2021
2
October, 2019
Available data
41
bam
41
zippedFastqFolder
40
bigWig
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
6
tsv
Organism
101
Homo sapiens
Biosample type
56
primary cell
44
tissue
1
cell line
Organ
55
epithelium
53
pancreas
11
heart
10
brain
9
kidney
7
connective tissue
6
adipose tissue
6
liver
3
blood vessel
3
vasculature
2
spleen
1
limb
1
musculature of body
Project
54
AMP
47
HPAP
Genome assembly (visualization)
224
GRCh38
hg19
Lab
54
AMP-T2D consortium
47
Klaus Kaestner, Upenn
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
101 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 2 more…
tissue
body of pancreas
2
2
heart left ventricle
4
adipose tissue
3
heart
1
2
liver
3
+ See 20 more…
cell line
HepG2
1
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