Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ChIP-seq
297
ATAC-seq
single cell RNA-seq
250
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
51
WGBS
32
Hi-C
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA methylation
Date released
41
May, 2022
August, 2017
6
February, 2021
4
July, 2019
Available data
41
zippedFastqFolder
6
fastq
6
tsv
1
bam
Organism
51
Homo sapiens
Biosample type
47
primary cell
4
tissue
Organ
47
epithelium
47
pancreas
2
heart
1
blood vessel
1
liver
1
vasculature
Project
47
HPAP
4
AMP
Genome assembly (visualization)
GRCh38
Lab
47
Klaus Kaestner, Upenn
4
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
GRCh38
month_released!
August, 2017
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
2
aorta
1
right lobe of liver
1
Download