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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
212
DNA accessibility
75
DNA methylation
Date released
187
June, 2019
41
May, 2022
16
November, 2018
14
August, 2017
12
July, 2019
10
October, 2019
6
February, 2021
1
November, 2020
Available data
227
bam
226
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
41
zippedFastqFolder
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
287
Homo sapiens
Biosample type
205
tissue
78
primary cell
3
cell line
1
in vitro differentiated cells
Organ
81
kidney
66
epithelium
59
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
240
AMP
47
HPAP
Genome assembly (visualization)
224
GRCh38
186
hg19
Lab
240
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
287 results
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Clear Filters
DNase-seq
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 44 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
+ See 20 more…
cell line
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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