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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1761
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
362
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
November, 2018
6
February, 2021
5
January, 2018
Available data
41
zippedFastqFolder
15
bigWig
15
fastq
11
bam
10
bed bedMethyl
10
bigBed bedMethyl
6
tsv
Organism
73
Homo sapiens
Biosample type
47
primary cell
21
tissue
4
in vitro differentiated cells
1
stem cell
Organ
47
epithelium
47
pancreas
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
vasculature
1
embryo
1
limb
1
musculature of body
Project
47
HPAP
26
AMP
Genome assembly (visualization)
10
GRCh38
5
hg18
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
month_released!
November, 2018
BIOSAMPLE
ASSAY
73 results
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WGBS
GRO-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 5 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
See all biosamples
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