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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
Date released
90
February, 2021
41
May, 2022
7
August, 2017
4
July, 2019
2
December, 2019
1
August, 2021
Available data
84
txt
41
zippedFastqFolder
18
bam
17
bed bedMethyl
bigBed bedMethyl
17
bigWig
17
fastq
8
tsv
Organism
144
Homo sapiens
Biosample type
98
tissue
47
primary cell
Organ
84
bone element
48
epithelium
47
pancreas
5
adipose tissue
5
connective tissue
4
liver
2
heart
2
kidney
1
blood vessel
1
vasculature
Project
98
AMP
47
HPAP
Lab
98
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
2
audit script error
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
145 results
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RNA microarray
WGBS
tissue
bone element
84
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
+ See 5 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
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