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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1461
total RNA-seq
484
ATAC-seq
270
single cell RNA-seq
182
DNase-seq
87
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
86
DNA methylation
Date released
41
May, 2022
17
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
28
bed bedMethyl
28
bigBed bedMethyl
21
fastq
12
bam
11
bigWig
6
tsv
Organism
86
Homo sapiens
Biosample type
56
primary cell
29
tissue
1
cell line
Organ
53
epithelium
53
pancreas
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
39
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
47
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
86 results
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Clear Filters
WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
tissue
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
HepG2
1
See all biosamples
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