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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
263
single cell RNA-seq
253
ChIP-seq
245
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA methylation
Date released
41
May, 2022
7
August, 2017
6
February, 2021
5
August, 2021
3
July, 2019
Available data
41
zippedFastqFolder
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
62
Homo sapiens
Biosample type
47
primary cell
10
tissue
5
cell line
Organ
47
epithelium
47
pancreas
6
liver
4
adipose tissue
4
connective tissue
2
heart
2
kidney
Project
47
HPAP
15
AMP
Lab
47
Klaus Kaestner, Upenn
10
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
62 results
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WGBS
STARR-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
right lobe of liver
1
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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