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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA methylation
Date released
41
May, 2022
6
February, 2021
5
August, 2021
Available data
41
zippedFastqFolder
6
fastq
6
tsv
Organism
52
Homo sapiens
Biosample type
47
primary cell
5
cell line
Organ
47
epithelium
47
pancreas
2
kidney
2
liver
Project
47
HPAP
5
AMP
Lab
47
Klaus Kaestner, Upenn
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
52 results
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WGBS
STARR-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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