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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
Date released
41
May, 2022
32
March, 2020
17
May, 2021
12
July, 2019
9
August, 2017
8
February, 2021
7
November, 2018
4
October, 2019
1
August, 2018
1
May, 2020
Available data
41
zippedFastqFolder
37
tsv
19
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
3
bedpe bed3+
2
bed bed3+
2
ibed
Organism
132
Homo sapiens
Biosample type
64
primary cell
52
tissue
7
cell line
5
in vitro differentiated cells
4
stem cell
Organ
52
pancreas
47
epithelium
11
connective tissue
11
heart
8
adipose tissue
8
liver
4
eye
3
blood vessel
3
spleen
3
vasculature
2
brain
2
intestine
2
kidney
2
musculature of body
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
limb
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
47
HPAP
17
T1D
Genome assembly (visualization)
17
GRCh38
4
hg19
Lab
68
AMP-T2D consortium
47
Klaus Kaestner, Upenn
17
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
132 results
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WGBS
pCHi-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 13 more…
tissue
heart left ventricle
4
1
adipose tissue
3
1
islet of Langerhans
4
liver
3
1
aorta
2
1
+ See 21 more…
cell line
HepG2
1
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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