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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
96
DNA methylation
Date released
41
May, 2022
32
March, 2020
27
July, 2019
17
May, 2021
15
August, 2017
8
February, 2021
7
November, 2018
4
October, 2019
1
August, 2018
1
May, 2020
Available data
41
zippedFastqFolder
37
tsv
36
bed bedMethyl
36
bigBed bedMethyl
22
fastq
19
bam
17
bigWig
3
bedpe bed3+
2
bed bed3+
2
ibed
Organism
153
Homo sapiens
Biosample type
74
primary cell
63
tissue
7
cell line
5
in vitro differentiated cells
4
stem cell
Organ
54
pancreas
53
epithelium
13
heart
12
connective tissue
10
liver
8
adipose tissue
7
musculature of body
6
kidney
5
eye
4
brain
4
vasculature
3
blood vessel
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
limb
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
47
HPAP
17
T1D
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
89
AMP-T2D consortium
47
Klaus Kaestner, Upenn
17
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
153 results
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WGBS
pCHi-C
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 23 more…
tissue
heart left ventricle
4
1
1
islet of Langerhans
4
1
liver
3
1
1
adipose tissue
3
1
pancreas
2
1
1
+ See 25 more…
cell line
HepG2
1
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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