Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1321
total RNA-seq
205
single cell RNA-seq
31
pCHi-C
18
small RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
6
DNA methylation
Date released
30
March, 2020
6
February, 2021
1
May, 2020
Available data
41
zippedFastqFolder
37
tsv
19
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
3
bedpe bed3+
2
bed bed3+
2
ibed
Organism
37
Homo sapiens
Biosample type
20
tissue
6
primary cell
5
cell line
4
stem cell
2
in vitro differentiated cells
Organ
7
pancreas
6
epithelium
3
heart
2
brain
2
connective tissue
2
intestine
2
kidney
2
liver
1
adipose tissue
1
adrenal gland
1
blood vessel
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
musculature of body
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vasculature
Project
31
AMP
6
HPAP
Lab
31
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
pCHi-C
WGBS
tissue
Ammon's horn
1
adipose tissue
1
adrenal gland
1
aorta
1
bladder (urinary bladder)
1
+ See 15 more…
primary cell
pancreatic alpha cell
6
cell line
HepG2
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
embryonic stem cell
1
See all biosamples
Download