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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
158
Transcription
69
DNA methylation
Date released
75
May, 2022
47
September, 2023
40
September, 2020
13
February, 2021
12
July, 2019
9
April, 2020
9
August, 2017
8
August, 2021
8
November, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
September, 2018
Available data
tsv
145
fastq
118
bam
117
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
227
Homo sapiens
Biosample type
128
primary cell
98
tissue
1
cell line
Organ
59
kidney
45
pancreas
41
epithelium
9
heart
9
lung
6
adipose tissue
6
connective tissue
6
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
126
HPAP
47
KPMP
45
AMP
9
LungMap
Genome assembly (visualization)
17
GRCh38
Lab
126
Klaus Kaestner, Upenn
47
KPMP
34
AMP-T2D consortium
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
files.file_type!
tsv
BIOSAMPLE
ASSAY
227 results
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single cell RNA-seq
WGBS
primary cell
Langerhans cell
85
pancreatic alpha cell
25
pancreatic beta cell
16
pancreatic cell
2
tissue
kidney
59
lung
9
heart left ventricle
4
liver
1
3
adipose tissue
3
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cell line
HepG2
1
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